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Jay Moore

(He/Him)

Research Assistant

Mapping cell-type-specific vulnerability by integrating large-scale genomic and neuropathological data.

Biography

Over the past seven years, I have moved from cancer genomics to drug development to neurodegeneration, using data to make biological discoveries at scale. Across my work (10+ publications, 2 patents), I focus on applying computational approaches to identify structure in complex biological systems and translate it into insights in human health.


I developed HRD-Sig, a pan-cancer biomarker derived from pattern analysis of over 260,000 cancer genomes, now used routinely in clinical profiling at the largest clinical cancer genomics profiling company in the U.S, Foundation Medicine (Roche). I then moved to London to join a five person drug discovery startup, where I led transcriptomic analyses to investigate mechanisms of action and supported cell therapy programmes. I subsequently transitioned to academia through an MSc at the Great Ormond Street Institute of Child Health (UCL), focusing on biomarker development and gene therapy in rare disease.


I am now applying this approach in the Skene lab, working to advance the quantitative understanding of the cellular degeneration in Parkinson’s disease. In parallel, I am interested in large-scale genomic datasets and developing agentic-AI for biology research, including work with ClawBio.

Research interest

My research in the Skene lab has two arms. The first is a systematic review and meta-analysis of 189 neuropathology studies in Parkinson's disease, producing a new quantitative framing of selective vulnerability as a threshold effect on neuronal reserve rather than accelerated loss. 


The second is scaling MAGMA cell-typing into a systematic programme that maps which cell types underpin genetic risk across the full space of human GWAS, benchmarked against proteomic and rare-variant data and released as an open resource. 


Alongside this, I develop agentic-AI tooling for the lab and the broader ClawBio project, building the analytical infrastructure needed to keep pace with the frontier of neurodegeneration research.

Key publications

JCO Precis Oncol
Published

Pan-Cancer Analysis of Copy-Number Features Identifies Recurrent Signatures and a Homologous Recombination Deficiency Biomarker to Predict Poly (ADP-Ribose) Polymerase Inhibitor Response.

Authors
Jay A Moore, Kuei-Ting Chen, Russell Madison, Justin Y Newberg, Zoe Fleischmann, Shuoguo Wang, Radwa Sharaf, Karthikeyan Murugesan, Bernard J Fendler, Jason Hughes, Alexa B Schrock, Priti S Hegde, Geoffrey R Oxnard, David Fabrizio, Garrett M Frampton, Emmanuel S Antonarakis, Ethan S Sokol, Dexter X Jin
Pan-Cancer Analysis of Copy-Number Features Identifies Recurrent Signatures and a Homologous Recombination Deficiency Biomarker to Predict Poly (ADP-Ribose) Polymerase Inhibitor Response.
Oncologist
Published

A Novel HRD Signature Is Predictive of FOLFIRINOX Benefit in Metastatic Pancreatic Cancer.

Authors
Kuei-Ting Chen, Russell Madison, Jay Moore, Dexter Jin, Zoe Fleischmann, Justin Newberg, Alexa Schrock, Neeru Bhardwaj, Katherine T Lofgren, Jie He, Garrett Frampton, Priti Hegde, David Fabrizio, Michael J Pishvaian, Ericka Ebot, Aatur Singhi, Ethan Sokol
A Novel HRD Signature Is Predictive of FOLFIRINOX Benefit in Metastatic Pancreatic Cancer.
Cancer Discov
Published

Integrative Analysis of a Large Real-World Cohort of Small Cell Lung Cancer Identifies Distinct Genetic Subtypes and Insights into Histologic Transformation.

Authors
Smruthy Sivakumar, Jay A Moore, Meagan Montesion, Radwa Sharaf, Douglas I Lin, Caterina I Colón, Zoe Fleishmann, Ericka M Ebot, Justin Y Newberg, Jennifer M Mills, Priti S Hegde, Quintin Pan, Afshin Dowlati, Garrett M Frampton, Julien Sage, Christine M Lovly
Integrative Analysis of a Large Real-World Cohort of Small Cell Lung Cancer Identifies Distinct Genetic Subtypes and Insights into Histologic Transformation.
Lancet Digit Health
Published

Comprehensive genomic profiling and treatment patterns across ancestries in advanced prostate cancer: a large-scale retrospective analysis.

Authors
Smruthy Sivakumar, Jessica K Lee, Jay A Moore, Julia Hopkins, Justin Y Newberg, Russell Madison, Ryon Graf, Alexa B Schrock, Erin Kobetz, Randy Vince, Idalid Franco, Crystal Seldon, Garrett M Frampton, Jennifer Mills, Jeffrey Venstrom, Brandon A Mahal
Comprehensive genomic profiling and treatment patterns across ancestries in advanced prostate cancer: a large-scale retrospective analysis.